rs225961872 SNP Detail

Summary

• ID
  rs225961872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62488213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCATGTT CTCTTTATTC
  AGTCAATCAG CTATTACATT CCTGAGGGAA GATGACACCA AACCTAGATG TAGGTACAGG
  GCATTCTTGC AAACTACATA ATGTCTAGTG TAGCAGTCTT GTAATCTGAG CCTCAAACAC
  AGGCCTTAAA AAAATTACAG CTACACGTCC TGAGTTCTAT GATTAGACTT AAATAACCGG
  R
  ACCACAATAT TTTAAATTTG TGATAGCTTC CAGAATTCTA TGAAAATAAG GACTGGCTTA
  ACATCAATGA CTTTGTCTGA ATGTAGTCTT ATGGATTCAG TTTTATAACA CCAGGTGTGT
  TCAAGGAATG ATGGTGAAAA AGGCTTTTCC CACAAGTTGG ATGAATAGTT ATGGGTCTCT
  ACATCTAAAT CTTTACAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380622859	MGP_WTSI_10_62115182	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225961872					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380622859	MGP_WTSI_10_62115182	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62488213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1632	CpG island 1632	521 bp distal
Ddx50	DExD box helicase 50	1216 bp upstream
Gm66017	predicted gene, 66017	within coordinates
Rr369004	regulatory region 369004	949 bp downstream
Rr432661	regulatory region 432661	1227 bp distal
Rr432662	regulatory region 432662	769 bp distal
Rr432663	regulatory region 432663	46 bp distal
Tssr93725	transcription start site region 93725	757 bp downstream
Tssr93726	transcription start site region 93726	728 bp downstream
Tssr93727	transcription start site region 93727	708 bp downstream
Tssr97868	transcription start site region 97868	1242 bp upstream
Tssr97869	transcription start site region 97869	1200 bp upstream