rs225965327 SNP Detail

Summary

• ID
  rs225965327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23717669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCAGAGG ACCAGAGTTC
  AGTGCTCACT ATCTATTTGG GTGGCTCACA CCAGTTCCAG AGGATCTATA CATACAAAGA
  CATGCACATA CTTAAAAATA ACTCTTTAAG AGAAAGTATT AAAATTAAGA GAACAGTTCT
  CTGTATAATT TTAAATATAG TCTTCAGCCT ACTCAAATAC TAGGCTGAAT GCAACCCAGA
  Y
  GCTATTGTCT CACAAAGGAG CAAGTTTTCC CTTTTATTTA GTCTTTTCCT AATTAATTCT
  TGCTGTCCTT CTGGGCCTTA GTAACGGACT TCTTGGAGCC CTTCTTCAGG GCGGGAGCGG
  ACTTGGCGGG CTCAGGCATA GTGAACAGAA AACAACACCA AGAAAAAAAA ATATTAGCCC
  TTGTTGCAAT TTAAATAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387984342	MGP_WTSI_13_23625368	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225965327					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387984342	MGP_WTSI_13_23625368	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23717669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5358	CpG island 5358	1625 bp distal
Cpgi5359	CpG island 5359	1658 bp proximal
Gm55640	predicted gene, 55640	615 bp downstream
Gm60769	predicted gene, 60769	22 bp downstream
H2ac10	H2A clustered histone 10	407 bp upstream
H3c8	H3 clustered histone 8	1919 bp upstream
Rr281120	regulatory region 281120	within coordinates
Rr403647	regulatory region 403647	142 bp upstream
Rr403648	regulatory region 403648	1637 bp upstream
Tssr4007	transcription start site region 4007	186 bp downstream
Tssr118827	transcription start site region 118827	1646 bp downstream
Tssr118828	transcription start site region 118828	370 bp upstream
Tssr118829	transcription start site region 118829	1912 bp upstream
Tssr121712	transcription start site region 121712	157 bp downstream
Tssr121713	transcription start site region 121713	1666 bp downstream