rs225971777 SNP Detail

Summary

• ID
  rs225971777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131711378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTATGAGG TAAGAATCAG
  AATAATATCT ATTTGTACAT CATATGGATA ACAATGAGGG CTTTGTTTTT GTTTTGTGAA
  TGCATAACAC GTGACTATCA AGATCAAATG AGATTAAGGT TGTAAAACTG CTTTGTAAAC
  TATAAATGTT TATTAGTACT AGAATTTTAG TTTCTAATAG TTCAGCGGTC CATCTACATA
  Y
  AGATCATAAA ATAAAATTAC AAAAAAAATA CGGAGCTAGG CATAGTGGCA TATACCTGCG
  ATTCCAGCTT GTGGGAGACG GGAGTGGGAG GATAAGGTGT TAGCCTTAGG TTTCATGAGA
  AGCTGTCTCA ACCCCTACCC TCATCCCCAG ACTTTTTTTT TTTTTTAAGG ACAACATTTA
  ATTGGGACTG GCTTACAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321329628	CHEV_4_131539982	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225971777					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131711378 () rs orientation: forward

Symbol	Name	Function Class
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Rr600834	regulatory region 600834	1948 bp distal
Rr600835	regulatory region 600835	499 bp distal
Tssr43622	transcription start site region 43622	1337 bp upstream