rs225974848 SNP Detail

Summary

• ID
  rs225974848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9068569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGATAAT AGAAGGTGGT
  GGTTCCCAGG CAACTTTTCC GGGTTCGGGT TGAGGGAATG GACGCTAGAG AAGGTGTGGT
  CGGGGCGTGT TCGGGCGAGC AGGTCCGGGT GCTATCAGCT GAGCCCTCCA GCGGAGCCAA
  AGCCAGGCGG TGACCTCTGG GCGGGGCTGC GGGAGACAGA TCAGGGGAGG CGAGCCTGCC
  R
  ACAGCTAGGT TCTCCTTTCT GGTCCTTTTA AAAGCTCTGG TGCGCTGCTT CTCTCTCACA
  GTGCTCCAGC GCGGCCAACG GGGACTGAGC GGTGAGTGGT CTGCTTTGCT GGCTGCTCTC
  TGGCTCTTCC TGCCTATATA GGTGGGGACT GAAGAGTCGA CTCTGGTGAT CACTACTAAG
  ACCCCGCAGG GAGTGGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382361441	MGP_WTSI_11_9018572	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225974848					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382361441	MGP_WTSI_11_9018572	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9068569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2578	CpG island 2578	within coordinates
Rr385585	regulatory region 385585	505 bp downstream
Rr442636	regulatory region 442636	52 bp distal
Rr442637	regulatory region 442637	within coordinates
Tssr3423	transcription start site region 3423	436 bp downstream
Tssr3424	transcription start site region 3424	428 bp downstream
Tssr100322	transcription start site region 100322	579 bp downstream
Tssr100323	transcription start site region 100323	552 bp downstream
Tssr100324	transcription start site region 100324	478 bp downstream
Tssr100325	transcription start site region 100325	13 bp downstream
Tssr100326	transcription start site region 100326	2 bp upstream
Tssr100327	transcription start site region 100327	50 bp upstream
Tssr100328	transcription start site region 100328	654 bp upstream
Tssr100329	transcription start site region 100329	710 bp upstream
Tssr100330	transcription start site region 100330	1487 bp upstream
Upp1	uridine phosphorylase 1	within coordinates