rs225983217 SNP Detail

Summary

• ID
  rs225983217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117547988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGGTCAA AGAAAAGCAT
  TGATAAGGCC AGATATAATG GTGTGCGTGT AATCCCAGGT ACAGAGCAAC AGCCGTCTGG
  GTCCACCTTT TAAGGTACAT CTAAGAACGG AGGGTGTGTG GCACCGAGAA GGTCCTGCAT
  TGTTCAGTCC TCGGTCCCCA AAGCAAAAGC CCCAGATCTT AAAGGACTTA AAACCAGGGG
  Y
  GGTGGCACAT TTGCACAGTC AAAGATAATC AGGAAGCTGA GGCAGGAGGA TAGCTTGAGT
  TGAGCAATTT AAAGCTAATT TGAGTAACAT TGATAACCTA CCTAAAGGAG AAAGGTAATT
  TCGTTCTTTG GGGCTTGCCA CTTCTTACTG ACAGCCTTCA TTTCCCCAAC AGTTCGTGAT
  TAAGGACTTT TCAGAAACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323498897	CHEV_10_117149139	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225983217					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117547988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2237	CpG island 2237	975 bp distal
Gm56970	predicted gene, 56970	550 bp downstream
Gm67727	predicted gene, 67727	within coordinates
Mdm2	transformed mouse 3T3 cell double minute 2	1325 bp upstream
Rr212986	regulatory region 212986	1813 bp proximal
Rr224309	regulatory region 224309	387 bp distal
Rr385357	regulatory region 385357	within coordinates
Tssr95921	transcription start site region 95921	1998 bp downstream
Tssr95922	transcription start site region 95922	1891 bp downstream
Tssr95923	transcription start site region 95923	1136 bp downstream
Tssr95924	transcription start site region 95924	327 bp downstream
Tssr99462	transcription start site region 99462	1996 bp upstream
Tssr99463	transcription start site region 99463	1984 bp upstream
Tssr99464	transcription start site region 99464	1955 bp upstream
Tssr99465	transcription start site region 99465	1878 bp upstream
Tssr99466	transcription start site region 99466	1780 bp upstream
Tssr99467	transcription start site region 99467	1422 bp upstream
Tssr99468	transcription start site region 99468	1347 bp upstream
Tssr99469	transcription start site region 99469	1310 bp upstream