rs225989052 SNP Detail

Summary

• ID
  rs225989052
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23805681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCTGCTA TCTCCCTTAA
  AAGTTATCGA CGTGGCAGCC GGGAGTAAAC TACTTCATTC CCATGGTCTC TAAGGGTCAC
  TTGTGGGATA TGAACTTACC CACCACCACC ACACATACAG GAGATTATGT ACAGACCTTC
  AGATAGCTAA GCTAGAGTTA ACACCATTGC GCACACCCAC ATATCCCCAG CCTCCTCTGC
  K
  AAGCTCAGCC CACTAAGGTT TGTTCCCACC CTAACCACAC CCCCTGTGAA TGTGCAACAG
  CTCTTTTACT GAGAGTTGTG GGTGGCTCTG AAAAGAGCCT TTGGGTTGTT GGGCTTCTAA
  GCAGTTGGCC AAAGAAAATT TACTTTTTCT TGGCTGCGGT TTTCTTTGGC TTAGCTGCCT
  TAGGCTTGGA GGTTTTTGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387986380	MGP_WTSI_13_23713567	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225989052					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387986380	MGP_WTSI_13_23713567	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23805681 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5367	CpG island 5367	240 bp distal
Cpgi5368	CpG island 5368	335 bp proximal
Gm11398	predicted gene 11398	649 bp upstream
H1f4	H1.4 linker histone, cluster member	79 bp downstream
H2bc6	H2B clustered histone 6	590 bp upstream
Rr403657	regulatory region 403657	328 bp downstream
Rr475906	regulatory region 475906	615 bp distal
Rr475907	regulatory region 475907	84 bp distal
Rr475908	regulatory region 475908	463 bp proximal
Rr475909	regulatory region 475909	850 bp proximal
Tssr118843	transcription start site region 118843	153 bp upstream
Tssr118844	transcription start site region 118844	297 bp upstream
Tssr121728	transcription start site region 121728	583 bp upstream
Tssr121729	transcription start site region 121729	191 bp downstream
Tssr121730	transcription start site region 121730	239 bp downstream
Tssr121731	transcription start site region 121731	292 bp downstream
Tssr121732	transcription start site region 121732	319 bp downstream
Tssr121733	transcription start site region 121733	850 bp downstream