rs225992842 SNP Detail

Summary

• ID
  rs225992842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70168159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTGGCCTC AGAAAGGGAT GGACACCAAG CACTAGGATG
  GCACGGCCTG AAACCAGCCT ATCATCTGAT ACCTGTGTGA GCCAAGGATC TAGTCAGGGA
  Y
  GCAGCTTCAA TTCAACTGAG TCCCTGTCAG TTCACCAGGA CCAGTCAGTC TGCCTTTCAT
  ATCATATAGA CCACTACAGC CACTTTCAAA CCTGACATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322696635	CHEV_8_72239408	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225992842					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70168159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20415	CpG island 20415	869 bp proximal
Gm51532	predicted gene, 51532	1643 bp upstream
Gm64048	predicted gene, 64048	1049 bp upstream
Rr400882	regulatory region 400882	831 bp upstream
Rr400883	regulatory region 400883	1356 bp upstream
Tssr77669	transcription start site region 77669	1071 bp upstream
Tssr81531	transcription start site region 81531	906 bp downstream
Tssr81532	transcription start site region 81532	928 bp downstream
Tssr81533	transcription start site region 81533	1318 bp downstream
Tssr81534	transcription start site region 81534	1341 bp downstream
Zfp869	zinc finger protein 869	within coordinates