rs226001060 SNP Detail

Summary

• ID
  rs226001060
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:29070646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAGAGGG ACACGCAGCC
  TTTTATATTC AGTCTTCAGG GCAAAGGGGG TTTAAAAAAA AACACTCAAA CATTCCAAAG
  CAAATATTCA ACCTCCTGCT GGTGTCCACG CACCTTATAT ACTCTTTCTC CAAATCTAGA
  CAGGGAAGAC CCAATGAGTT GTTAAATGTG AGGGTAAAGA GATGGGGTGA AAGGGGGCAT
  W
  GGGAGCTGTA TTCCTGGCTA GGATTAAAGA TGCGAAGAGG GGGTAGGAAG GGAACCTTGC
  TGGGTCTGGA ATGTCATGGG TGTGGATCAT AACAAGCACC CTTCCAGTGC TTGCCAAGTC
  TCTCCCCTAG GGGAGAACAA AGACTCTGTG AGAGGGCTTC CGTTCTGATC TCCTGGGGTC
  TGCACTGGGC CCAGTGTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388108873	MGP_WTSI_13_28978532	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	T	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	T	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226001060					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	T	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	T	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388108873	MGP_WTSI_13_28978532	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:29070646 () rs orientation: forward

Symbol	Name	Function Class
2610307P16Rik	RIKEN cDNA 2610307P16 gene	1241 bp upstream
Cpgi5396	CpG island 5396	1334 bp distal
Rr281171	regulatory region 281171	within coordinates
Tssr121895	transcription start site region 121895	1972 bp upstream
Tssr121896	transcription start site region 121896	1343 bp upstream
Tssr121897	transcription start site region 121897	1281 bp upstream
Tssr121898	transcription start site region 121898	1030 bp upstream