rs226006250 SNP Detail

Summary

• ID
  rs226006250
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136378251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCGCTCCT ACGTTTGCTC
  AGATTTTAAA GTTTTGAGTT GTGTTGTGCT GTGCTGTGTG TGCGTGCGCG CGTGCGTGCG
  TGTGTGTTAT GTTTTCTTTT GTGAGAGAAT AAAATATTTT CTCTCCTTTT GGTTATGTTG
  GAACCATTCC TACTTAAAAG TAGGATTCAT AGAGCCGTCA AAATAAAGAT GGAATAGGAA
  W
  AGCTCTGTAA AAAAAAAAGG TGATAAAGCC TCAGATGCAC CGCTGTCTTG TGCAATGATC
  AGCAAGTATC TCCTTAATGT GTGACGTTTA GGCATAGCTC CAATGCAAAG ATACTTTGTT
  TCCTAAACAA AGTAATAGTT TACAAAGATG ATACTATGTG TTGGTAGAAA AAAAAGTCCT
  GTCACATTCC CTGTTTAGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359865523	MGP_WTSI_3_136335454	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226006250					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359865523	MGP_WTSI_3_136335454	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136378251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13862	CpG island 13862	101 bp distal
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	within coordinates
Rr398057	regulatory region 398057	1388 bp downstream
Rr585837	regulatory region 585837	1710 bp distal
Rr585838	regulatory region 585838	within coordinates
Rr585839	regulatory region 585839	1628 bp proximal
Tssr31871	transcription start site region 31871	1963 bp downstream
Tssr31872	transcription start site region 31872	1907 bp downstream
Tssr31873	transcription start site region 31873	1888 bp downstream
Tssr31874	transcription start site region 31874	1762 bp downstream
Tssr31875	transcription start site region 31875	1666 bp downstream
Tssr31876	transcription start site region 31876	1616 bp downstream
Tssr31877	transcription start site region 31877	606 bp upstream