rs226022367 SNP Detail

Summary

• ID
  rs226022367
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8616480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTAAAAG ATTTAGCAAG
  ATTTAGATTC TAGCTACTTT TCTAAAATTG GGAGCTACAT CTTAAGTGAT AGCTCAGGAA
  TTTAAAAGTT ATTTTATAAT TTATTCCTTC CTTTAGTTAT ATGAAAATAC TGTAAAAACT
  GACATGTCTT TATGACATAA TTTATCATTT TAAATTAAAT ACTGAAGCAG CTAAATTTAG
  S
  TTTTCATAAA GCTAAATTTT ATCTTCCTAA TTTCCAAATC TATTATTGCC AATATTTATT
  TCTTAAATAT TTATCACCAA ATGTGAATAT ATTTGAATGA ATATATTTAT CACCAAAATA
  TTTTCAATAT TGTTTCAAAT GTCACATGTA TAAAATTTGG CTTAATGTTT CTAATTAATC
  CTTAGTCTGT GGATGGACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321463536	CHEV_5_8566480	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226022367					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8616480 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	573 bp upstream
Rr130297	regulatory region 130297	921 bp proximal
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	613 bp upstream
Tssr45119	transcription start site region 45119	633 bp upstream