rs226023200 SNP Detail

Summary

• ID
  rs226023200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31997958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGAAGAC AACTTGCAAG
  AGTCAGTTAT AGCCTACTCT TTGAATTCCG GGGCTTGAAC TGGATTATCA GGCTTGGCAG
  CAAACACCTC TACCCACTGA ACGGACTCAC CAGCCCCTCC TGTGGACTTT AAATCATTTC
  TAAAACATTC TAATACTTCT ATACTATTCT GTTCTAAAAC TACCCTATAC TGTTCTATTT
  Y
  ATACTTCTGT ACTATGCCTA ATACACTGTA TTCTTAGGGA TGTGGCAAGA AAAAGAATCT
  AACCTTAGTG AGTATATTTT TAAATTATTT TTTACTTTAG TAGACAATAT GATATGTTTC
  ATAATGGCAT TTTCATAAAT ATGTATCATC ATACTTTGTC AGACATAATT TCTTATTTTA
  TTTTGCTTTA GGACAGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395853945	MGP_WTSI_16_32179226	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226023200					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395853945	MGP_WTSI_16_32179226	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31997958 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	660 bp upstream
Rr370081	regulatory region 370081	1826 bp downstream
Rr370082	regulatory region 370082	1634 bp downstream
Rr514653	regulatory region 514653	1392 bp distal
Tssr137949	transcription start site region 137949	1551 bp downstream
Tssr137950	transcription start site region 137950	1465 bp downstream
Tssr137951	transcription start site region 137951	636 bp upstream
Tssr137952	transcription start site region 137952	654 bp upstream
Tssr137953	transcription start site region 137953	698 bp upstream
Tssr137954	transcription start site region 137954	714 bp upstream
Tssr140795	transcription start site region 140795	439 bp downstream
Tssr140796	transcription start site region 140796	456 bp downstream
Tssr140797	transcription start site region 140797	474 bp downstream
Tssr140798	transcription start site region 140798	535 bp downstream