rs226027176 SNP Detail

Summary

• ID
  rs226027176
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116509699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGTGTGT GTGTTTCCCA
  GGGATAGCTT ATAAAGGGAA AAAACACAAT GGGCTCCTAA GTGGGTGAAG GAGGGCTATA
  GAGCGGTCGG CCCCTCTCCA AGTTTTTTTA GTAGTTTGAA CTTAACAGTT CAAGCTGCCC
  TGTTATATCT TGCTTGGCTG AGTGAAGGCT GCATTTGGGA AATTTCCAAT CATAATCATC
  S
  TCATCCTCAG AATATATGGT CAATTTGATC TCTGAGTCAA ATTGTGTGTG TGTGTGTATG
  TGTGTGTGTG TGTTTACAAT CAAAGTGCAA TATGTTTTGT GTCAACAATA TGGAGTGGCC
  AACAGAAATG AAACAAAAGA ATTACAGCCA AGCTCGAGGT GACTTTAAGC TAGGGAACGG
  GCTTCAACAT GGGGACCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362953551	MGP_WTSI_4_116325107	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226027176					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362953551	MGP_WTSI_4_116325107	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116509699 () rs orientation: forward

Symbol	Name	Function Class
Akr1a1	aldo-keto reductase family 1, member A1	828 bp upstream
Cpgi14637	CpG island 14637	795 bp distal
Rr597944	regulatory region 597944	833 bp distal
Rr597945	regulatory region 597945	815 bp distal
Rr597946	regulatory region 597946	332 bp distal
Tssr38539	transcription start site region 38539	967 bp downstream
Tssr42909	transcription start site region 42909	1093 bp upstream
Tssr42910	transcription start site region 42910	1076 bp upstream
Tssr42911	transcription start site region 42911	1056 bp upstream
Tssr42912	transcription start site region 42912	953 bp upstream
Tssr42913	transcription start site region 42913	931 bp upstream
Tssr42914	transcription start site region 42914	866 bp upstream
Tssr42915	transcription start site region 42915	837 bp upstream
Tssr42916	transcription start site region 42916	820 bp upstream