rs226040816 SNP Detail

Summary

• ID
  rs226040816
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:57956690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC TCAAGGGCAC TTTAACAGCG
  T
  ACAGCGCCGG GGTAGATCAC GGTCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321136109	CHEV_4_57969562	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226040816					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57956690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14335	CpG island 14335	within coordinates
Gm35344	predicted gene, 35344	62 bp upstream
Gm57068	predicted gene, 57068	within coordinates
Rr398279	regulatory region 398279	81 bp downstream
Rr592848	regulatory region 592848	290 bp distal
Rr592849	regulatory region 592849	904 bp distal
Rr592850	regulatory region 592850	55 bp distal
Rr592851	regulatory region 592851	242 bp distal
Rr592852	regulatory region 592852	44 bp proximal
Rr592853	regulatory region 592853	545 bp proximal
Tssr1183	transcription start site region 1183	332 bp upstream
Tssr1184	transcription start site region 1184	266 bp upstream
Tssr37396	transcription start site region 37396	64 bp downstream
Tssr37397	transcription start site region 37397	234 bp upstream
Tssr41866	transcription start site region 41866	392 bp upstream
Txn1	thioredoxin 1	279 bp upstream