rs226061582 SNP Detail

Summary

• ID
  rs226061582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101166422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTCTGCC TCAGCACCCT
  CTGCCTCAGC ACCCTCTGCC TCAGCACCCT CTGCCTCAGC ACCCTCTGCC CCAGCACCCT
  CTGCCCCAGC ACCCTCTGCC TCAGCACCCT CTGCCTCAGC ACCCTCTGCC TCAGCACCCT
  CTGCCTCAGC ACCCTCTGCC TCAGCACCCT CTGCCTCAGT GTTCCTGTGT GACCTGTCTT
  Y
  TCAACTAGAA AGTCTAGAAC TGTACAGACC CCAGAGTTGG AGGTGGAAAG GGACACTAGG
  TCCTGGAGCC TCCTCTGTGG GCTTTTTTGA CCAGATGAGA ACGTAAGGGC CTCCTCCAGC
  TACCCCTGGT CATTCAGGTG CTTCAGGTTT GTGACCTTTG CTGAGACCCT GGATGCTGCA
  GCAAACAGAC ATCTGCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395192959	MGP_WTSI_15_101098972	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226061582					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395192959	MGP_WTSI_15_101098972	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101166422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7777	CpG island 7777	1293 bp distal
Gm63176	predicted gene, 63176	1873 bp upstream
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr370021	regulatory region 370021	581 bp downstream
Rr509998	regulatory region 509998	1998 bp distal
Rr510000	regulatory region 510000	1685 bp distal
Rr510001	regulatory region 510001	1826 bp distal
Rr510002	regulatory region 510002	within coordinates
Rr510003	regulatory region 510003	1333 bp distal
Tssr133214	transcription start site region 133214	1682 bp downstream
Tssr133215	transcription start site region 133215	1429 bp downstream
Tssr133216	transcription start site region 133216	1398 bp downstream
Tssr133217	transcription start site region 133217	1295 bp downstream
Tssr133218	transcription start site region 133218	667 bp downstream
Tssr133219	transcription start site region 133219	645 bp downstream
Tssr133220	transcription start site region 133220	550 bp downstream
Tssr133221	transcription start site region 133221	490 bp downstream
Tssr133222	transcription start site region 133222	846 bp upstream
Tssr133223	transcription start site region 133223	1535 bp upstream
Tssr133224	transcription start site region 133224	1578 bp upstream
Tssr133225	transcription start site region 133225	1589 bp upstream
Tssr133226	transcription start site region 133226	1610 bp upstream
Tssr133227	transcription start site region 133227	1618 bp upstream
Tssr133228	transcription start site region 133228	1636 bp upstream
Tssr133229	transcription start site region 133229	1647 bp upstream
Tssr133230	transcription start site region 133230	1725 bp upstream
Tssr133231	transcription start site region 133231	1757 bp upstream
Tssr133232	transcription start site region 133232	1776 bp upstream
Tssr133233	transcription start site region 133233	1804 bp upstream
Tssr133234	transcription start site region 133234	1822 bp upstream
Tssr133235	transcription start site region 133235	1855 bp upstream
Tssr133236	transcription start site region 133236	1904 bp upstream
Tssr133237	transcription start site region 133237	1926 bp upstream
Tssr133238	transcription start site region 133238	1959 bp upstream
Tssr136544	transcription start site region 136544	1977 bp upstream
Tssr136545	transcription start site region 136545	1758 bp downstream
Tssr136546	transcription start site region 136546	1880 bp downstream
Tssr136547	transcription start site region 136547	1956 bp downstream
Tssr136548	transcription start site region 136548	1966 bp downstream
Tssr136549	transcription start site region 136549	2000 bp downstream