rs226083328 SNP Detail

Summary

• ID
  rs226083328
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184545216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aatagtgct actgttagga atcgtatcgt
  aaatacctga taggcaggat atctgatatg tggcccctgt ggaaggatcg tgacccacag
  gttgagaagt gcCCTGTACA CACCAGTGAC CAATTAAGGC TTAGAACCCA GGGAAGACAC
  R
  TGGTGATCTT GTAAAATGAG TAAGAAGCAA AAGTCACAGA GGAAGTAGGA GAGACTCGCA
  CTTATTAATG ACAATGGAAC CACACAGCTG TAAGAGAGCT AACTCGGCTC CATGTTAACT
  TAGTGTTTGT ACTGTTACTG CAAGCTAGTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169582	CHEV_1_186636898	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226083328					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184545216 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	1682 bp distal
Gm70890	predicted gene, 70890	157 bp downstream
Mtarc1	mitochondrial amidoxime reducing component 1	1822 bp upstream
Mtarc2	mitochondrial amidoxime reducing component 2	49 bp downstream
Rr425290	regulatory region 425290	1085 bp distal
Rr425291	regulatory region 425291	579 bp distal
Rr425292	regulatory region 425292	650 bp distal
Rr425293	regulatory region 425293	502 bp distal
Rr425294	regulatory region 425294	1426 bp proximal
Tssr15651	transcription start site region 15651	1856 bp upstream
Tssr15652	transcription start site region 15652	1816 bp upstream
Tssr15653	transcription start site region 15653	1755 bp upstream
Tssr15654	transcription start site region 15654	1716 bp upstream
Tssr15655	transcription start site region 15655	1705 bp upstream