rs226084498 SNP Detail

Summary

• ID
  rs226084498
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96077598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gttacagat ggttgtgagc caccatgtgg
  ttgctgggat ttgaactctg gaccttcgga agagcagtcg ggtgctctta cccactgagc
  catctcacca gccccAAAAT CAAATTTCTA ATTAGAAAAT TCAGCAGCTG GTTTTCCCGG
  Y
  GAGGGACCCC CAACAGAGAG GTCCACCAGT GGGAAGGGGA GAGACTGCCT CTACCTCTTC
  TCTAAATCCC CATCTCCTTT CCTCGAGCTG TTAGTAGGCC AGGCAATGGG TATGCTTTAT
  TTTCCTTCAG CCGGTGAGTG GGTTCAAACC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322811393	CHEV_8_97874870	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226084498					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96077598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20872	CpG island 20872	637 bp proximal
Mmp15	matrix metallopeptidase 15	1326 bp upstream
Tssr78982	transcription start site region 78982	1266 bp upstream
Tssr78983	transcription start site region 78983	1288 bp upstream