rs226099439 SNP Detail

Summary

• ID
  rs226099439
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:104425493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTGTGTG TGGGAGGGTG
  TGCAGAGAAG AGGGGAGAAA AGGGAAACCA AACCATTGCT TGGAACTTTA AAAAAATACA
  CTGAATATAA TTTTCAATTT ACTCTCTTGT GTTCAGAATT TTTGTACTAT TTTTTCTTTC
  TTTTTCATTT CTTTTCTTAA GATTATTTTG ATTAGACTGA ACTATTTAGT GGTGAATTTG
  S
  AGCCCTTAAA ATTCATGACA GGGAAAGAAA GGCAATGTAA AACTTAAAGG CGTCTTAGAA
  AATTAATTTT GAAGATGATT ATTTTCCCCA AAGCAGCAGT GCAGCCTTGT TTATATTAAC
  CTGATGCTTA CATGTGAATA GTAGTGATGT TTTTGGAGTG TGCTACATTA AAGCAAATCA
  TTCATTTATC ACAACTGGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324514942	CHEV_13_105079065	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226099439					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:104425493 () rs orientation: forward

Symbol	Name	Function Class
Adamts6	ADAM metallopeptidase with thrombospondin type 1 motif 6	within coordinates
Gm60746	predicted gene, 60746	1770 bp upstream
Gm60750	predicted gene, 60750	1632 bp downstream
Rr369763	regulatory region 369763	1812 bp downstream
Tssr120915	transcription start site region 120915	1923 bp downstream
Tssr120916	transcription start site region 120916	1878 bp downstream
Tssr120917	transcription start site region 120917	1853 bp downstream
Tssr120918	transcription start site region 120918	1838 bp downstream
Tssr120919	transcription start site region 120919	1606 bp downstream
Tssr120920	transcription start site region 120920	1519 bp downstream
Tssr120921	transcription start site region 120921	1487 bp downstream
Tssr120922	transcription start site region 120922	1461 bp downstream
Tssr120923	transcription start site region 120923	1103 bp downstream
Tssr120924	transcription start site region 120924	1062 bp downstream
Tssr120925	transcription start site region 120925	1023 bp downstream