rs226106018 SNP Detail

Summary

• ID
  rs226106018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76300461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTTGTCT GAATCCAGCC
  ATCTCAAGGA CAACTTCTCC ATCTTGTTGG CAGGGTCAAA CAACCTAGGA GCGAACACCT
  ACCCCACTTC TCCAAATGTT TTCTTAACTG TCTGTTAACA GGTAAAGAAT ATAGAAATTG
  CTGTTTTTCT AAACCAAGGT ACATATGTTA TAAAAATATA TAACCAATCA CCTGTCCTGC
  Y
  CTAGTTAACT ACATGCAGCT GATCAGCTCC TTTGTCCCCT TATCACTCTG AGCTCCAGAC
  CTAAAGTTCA GGAGAATGAA TTAAGGACCT TGAAGTCAGG TCCCTTGGAT TCACCCAGTC
  TCCAGCGGGT ACTCCCTTGC TTAAGCCAAA ATGTCAACCA AAATACAATT GGATAACACT
  GCAGCTCACC CCAGCTCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104732	CHEV_12_77354674	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226106018					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76300461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	1200 bp proximal
Gm47525	predicted gene, 47525	488 bp downstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1611 bp upstream
Rr403350	regulatory region 403350	1358 bp upstream
Rr468112	regulatory region 468112	1121 bp proximal
Tssr113934	transcription start site region 113934	1522 bp upstream
Tssr113935	transcription start site region 113935	1557 bp upstream
Tssr113936	transcription start site region 113936	1603 bp upstream
Tssr113937	transcription start site region 113937	1645 bp upstream
Tssr113938	transcription start site region 113938	1661 bp upstream
Tssr113939	transcription start site region 113939	1684 bp upstream
Tssr113940	transcription start site region 113940	1766 bp upstream
Tssr113941	transcription start site region 113941	1796 bp upstream
Tssr116711	transcription start site region 116711	1359 bp downstream
Tssr116712	transcription start site region 116712	1385 bp downstream