rs226121669 SNP Detail

Summary

• ID
  rs226121669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46451727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCGCCCG CGGGCCCCCG
  CGGCCACGGG GAGGACGGCG GGTGGAGAAG CAAACTTTGA GCCGCTCGCC CGCCCGGTCC
  TCTCCCGGAG GGAGCGCTCG CGCGTGTGGC CGGCGGCGAG GGCGGGCGCG GGGGTTGTGT
  AACGCTGGGA GCCATGTTTG CAGCCTCCCG GGATGCGCGG CCGGGCGGAG GCCGGGCCTG
  Y
  CGAGGCGCCG CGCCGCCGCC AGGCCCGCCG CGGGGCCGGG CCGGGTTCCA TGCGCCCCGC
  GGCCGACAGG GCCTCGCCGC CGAGGAGGGT GTTCGGGTCC CTGAGGGGGG CGCGGAGCCC
  CCCTCGGGCG CGGCCTGGCG CGGAACGGGG GAGGGGCGGG CCTGGCGGCG GAGGTGGCGC
  AACCGCCGCC CCTCCCGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss361391777	MGP_WTSI_4_46464599	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs226121669					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361391777	MGP_WTSI_4_46464599	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46451727 () rs orientation: forward

Symbol	Name	Function Class
Anp32b	acidic nuclear phosphoprotein 32 family member B	within coordinates
Cpgi14257	CpG island 14257	within coordinates
Gm69233	predicted gene, 69233	234 bp upstream
Rr100990	regulatory region 100990	within coordinates
Tssr37119	transcription start site region 37119	840 bp downstream
Tssr37120	transcription start site region 37120	824 bp downstream
Tssr37121	transcription start site region 37121	733 bp downstream
Tssr37122	transcription start site region 37122	676 bp downstream
Tssr37123	transcription start site region 37123	616 bp downstream
Tssr37124	transcription start site region 37124	601 bp downstream
Tssr37125	transcription start site region 37125	570 bp downstream
Tssr37126	transcription start site region 37126	433 bp upstream
Tssr41577	transcription start site region 41577	241 bp upstream
Tssr41578	transcription start site region 41578	845 bp downstream