rs226122903 SNP Detail

Summary

• ID
  rs226122903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66212959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTGGAA CTCAGTAAAA
  TTCACTGTTT CCTCAAGGCT GAGCAGCTAA GCAGGAGTGG CTATTTATTC TTTATGGCCC
  AAGGTGAGAC TTGGGAACCT CCGAGTTTCG CCATGAGAAA TGGATTTGGG GGGCGGCGGC
  GGGGGGACGG GGGGTGCTGA CAGGGTACCC AGGAGGCAGA ACAGTGGGAA CTTGGGTCAG
  Y
  TTCTGTGTGG CCACAGGGGG ATACAGGCTG GAGTACACAC AATGCCTTAC TCTACTTCTC
  TGGGTCCCAG CTAGAGGAGT TTCTAAACCA GAGCTCACCC TTCTACTTCT GGATGAACGG
  CGACCGCATC GACTCCCTGC TGGAGAGTGA CCGGCAGCAG AGCCAAGTCC TGGATGCCAT
  GCAGGACAGC TTTGCTCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367420	MGP_WTSI_14_66594347	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226122903					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367420	MGP_WTSI_14_66594347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66212959 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Tssr126267	transcription start site region 126267	1248 bp downstream
Tssr126268	transcription start site region 126268	594 bp downstream
Tssr126269	transcription start site region 126269	532 bp downstream
Tssr126270	transcription start site region 126270	72 bp upstream
Tssr126271	transcription start site region 126271	90 bp upstream
Tssr126272	transcription start site region 126272	115 bp upstream
Tssr126273	transcription start site region 126273	142 bp upstream
Tssr126274	transcription start site region 126274	186 bp upstream
Tssr126275	transcription start site region 126275	195 bp upstream
Tssr126276	transcription start site region 126276	228 bp upstream
Tssr126277	transcription start site region 126277	293 bp upstream
Tssr126278	transcription start site region 126278	329 bp upstream
Tssr126279	transcription start site region 126279	1390 bp upstream
Tssr126280	transcription start site region 126280	1420 bp upstream
Tssr129265	transcription start site region 129265	616 bp upstream
Tssr129266	transcription start site region 129266	583 bp upstream
Tssr129267	transcription start site region 129267	567 bp upstream
Tssr129268	transcription start site region 129268	501 bp upstream
Tssr129269	transcription start site region 129269	188 bp downstream
Tssr129270	transcription start site region 129270	209 bp downstream
Tssr129271	transcription start site region 129271	253 bp downstream
Tssr129272	transcription start site region 129272	1425 bp downstream