CGTAGGAGGG AACCTTTAGG CCAGCCATCC ACCCCGCTGT GCGCCTGCCA GACGCGACCC TCCTCTCCTC CATGTGGGAT GCAGGACCAG CGTGCGGGAA GGGGGCGGGG CTCAGATGTC CGTCCCTCCC TCTCTAAGAC ACACACAGAG CTAGAGCTAG CACGCCACTG CCCAGGTCGA CTACCACTCC CGGGCACCTC R GGAAGCGAAC CAGAGACTGT CCCCTCCGCC AGCATCCTAG AAGGCCAGGA AAGAGACGAG CTGAGCGCCT CCTTAAAGCT GCGCAGACTG CCCTCAATCC CTCCCCCCTG GAGCTCCAAC TGGTAGTCCC CTGCATCAGC CTTGCCCAGC TTCTCCTTTC CTCCTCAGCT CAACTCCTGC TTGCCCTTCG GGAGACCCAC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss381349753 | MGP_WTSI_10_94880048 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | A | G | G | G | G | A | G | G | G | G | G | A | G | A | G | G | G | G | A | G | G | G | A | G | G | A | G | G | G | G |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs226134409 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | A | G | G | G | G | A | G | G | G | G | G | A | G | A | G | G | G | G | A | G | G | G | A | G | G | A | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss381349753 | MGP_WTSI_10_94880048 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr10:95253276 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
5730420D15Rik | RIKEN cDNA 5730420D15 gene | within coordinates | ||||||
Cpgi2139 | CpG island 2139 | within coordinates | ||||||
Rr225467 | regulatory region 225467 | within coordinates | ||||||
Rr385140 | regulatory region 385140 | 189 bp downstream | ||||||
Socs2 | suppressor of cytokine signaling 2 | 234 bp upstream | ||||||
Tssr95358 | transcription start site region 95358 | 1787 bp downstream | ||||||
Tssr95359 | transcription start site region 95359 | 421 bp downstream | ||||||
Tssr95360 | transcription start site region 95360 | 147 bp downstream | ||||||
Tssr95361 | transcription start site region 95361 | 29 bp downstream | ||||||
Tssr95362 | transcription start site region 95362 | 1268 bp upstream | ||||||
Tssr99033 | transcription start site region 99033 | 1931 bp upstream | ||||||
Tssr99034 | transcription start site region 99034 | 1903 bp upstream | ||||||
Tssr99035 | transcription start site region 99035 | 1408 bp upstream | ||||||
Tssr99036 | transcription start site region 99036 | 1379 bp upstream | ||||||
Tssr99037 | transcription start site region 99037 | 682 bp upstream | ||||||
Tssr99038 | transcription start site region 99038 | 580 bp upstream | ||||||
Tssr99039 | transcription start site region 99039 | 553 bp upstream | ||||||
Tssr99040 | transcription start site region 99040 | 337 bp upstream | ||||||
Tssr99041 | transcription start site region 99041 | 304 bp upstream | ||||||
Tssr99042 | transcription start site region 99042 | 145 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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