TATAATTAGA TTACATTTCT AATAGAGTGT TGTGTATTGG TCTCTCACTC CATTTGTCTT TTATTTGAGG TAGTAGTTTA ATATCCAGTA ATAATGCAAG ATTTGGACTT TGCTTAGTCC ATGTGACCAC TTCAAGATTT TATGATAGTT ACAGCATGTT CTCTCTGCGA TTTATCTCAT ATATTTATTC ATAAGTATTT W AAGTAAGATG TGAAATTTTA CCTTTTTCTA ATTAAAAAAA CTTGAACATC TATTTTCTAA AATTATATAT ATATTCCTTT TTTACACAGA ATCCTACTGT GTTGTCTAGT CTGGTTTTGA ACTTGTGGGC TCAGATGACC CTTCTGTATC GCCCTCCTCA GCAGCTGGCT CTATTTTCTA ACATTATTAT TACTTTGAAT W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RIIIS/J |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss376560235 | MGP_WTSI_9_7347967 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RIIIS/J |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs226141259 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss376560235 | MGP_WTSI_9_7347967 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/T |
Location: Chr9:7347967 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Mmp12 | matrix metallopeptidase 12 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Tssr83683 | transcription start site region 83683 | 1813 bp downstream | ||||||
Tssr83684 | transcription start site region 83684 | 557 bp downstream | ||||||
Tssr83685 | transcription start site region 83685 | 494 bp downstream | ||||||
Tssr83686 | transcription start site region 83686 | 445 bp downstream | ||||||
Tssr83687 | transcription start site region 83687 | 427 bp downstream | ||||||
Tssr83688 | transcription start site region 83688 | 236 bp upstream | ||||||
Tssr83689 | transcription start site region 83689 | 601 bp upstream | ||||||
Tssr83690 | transcription start site region 83690 | 637 bp upstream | ||||||
Tssr83691 | transcription start site region 83691 | 656 bp upstream | ||||||
Tssr83692 | transcription start site region 83692 | 687 bp upstream | ||||||
Tssr83693 | transcription start site region 83693 | 723 bp upstream | ||||||
Tssr83694 | transcription start site region 83694 | 749 bp upstream | ||||||
Tssr83695 | transcription start site region 83695 | 821 bp upstream | ||||||
Tssr83696 | transcription start site region 83696 | 876 bp upstream | ||||||
Tssr83697 | transcription start site region 83697 | 935 bp upstream | ||||||
Tssr83698 | transcription start site region 83698 | 1090 bp upstream | ||||||
Tssr83699 | transcription start site region 83699 | 1140 bp upstream | ||||||
Tssr83700 | transcription start site region 83700 | 1188 bp upstream | ||||||
Tssr83701 | transcription start site region 83701 | 1233 bp upstream | ||||||
Tssr83702 | transcription start site region 83702 | 1270 bp upstream | ||||||
Tssr83703 | transcription start site region 83703 | 1753 bp upstream | ||||||
Tssr83704 | transcription start site region 83704 | 1785 bp upstream | ||||||
Tssr88064 | transcription start site region 88064 | 723 bp downstream | ||||||
Tssr88065 | transcription start site region 88065 | 824 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 07/22/2025 MGI 6.24 |
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