rs226158611 SNP Detail

Summary

• ID
  rs226158611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90622283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCCATT ATTAATTTCA
  AATGGGGCAG GTGTTAGGAG GGCAAAAATC CACATATTAA GTGCAAAGCC TTTCAGGAGA
  TTTCCTGAAA CTAGACAAAA CCCGTGTGAC TGGCATCGAT TATTCTATTT GATCTAGCTA
  GTCCTAGCAA AGTGACAACT GCTACTCCCC TCCTACACAG CCAAGATTCC TAAGTTGGCA
  R
  TGGCATGCTT AATCCTCAAA GCCAAAGTTA CTTGGCTCCA AGATTTATAG CCTTAAACTG
  TGGCCTCACA TTCCTTCCTA TCTTACTTTC CTGCACTGGG GTAAATGTCT CCTTGCTCTT
  CTTGCTTTCT GTCCTACTGC AGGGCTCTTG CTGAGCTGGT GAAGCACAAG CCCAAGGCTA
  CAGCGGAGCA ACTGAAGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365836713	MGP_WTSI_5_90903450	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226158611					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365836713	MGP_WTSI_5_90903450	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90622283 () rs orientation: forward

Symbol	Name	Function Class
Alb	albumin	within coordinates
Rr123614	regulatory region 123614	1811 bp distal
Rr123615	regulatory region 123615	within coordinates
Rr123616	regulatory region 123616	756 bp proximal
Tssr47115	transcription start site region 47115	1943 bp downstream
Tssr47116	transcription start site region 47116	1918 bp downstream
Tssr47117	transcription start site region 47117	1885 bp downstream
Tssr47118	transcription start site region 47118	1849 bp downstream
Tssr47119	transcription start site region 47119	1819 bp downstream
Tssr47120	transcription start site region 47120	134 bp upstream
Tssr47121	transcription start site region 47121	840 bp upstream
Tssr51771	transcription start site region 51771	1863 bp upstream
Tssr51772	transcription start site region 51772	1738 bp upstream
Tssr51773	transcription start site region 51773	187 bp downstream
Tssr51774	transcription start site region 51774	245 bp downstream
Tssr51775	transcription start site region 51775	875 bp downstream