rs226166141 SNP Detail

Summary

• ID
  rs226166141
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156078127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTT GGTGGGCGTT CTTCTCCGGT
  G
  CTGTTCGGCG TAGTTCTTAA ACCGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444392	CHEV_4_155367779	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226166141					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156078127 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	1021 bp upstream
Cpgi15496	CpG island 15496	within coordinates
Rr377473	regulatory region 377473	within coordinates
Rr606630	regulatory region 606630	1075 bp distal
Rr606631	regulatory region 606631	283 bp distal
Rr606632	regulatory region 606632	972 bp distal
Rr606633	regulatory region 606633	698 bp distal
Rr606634	regulatory region 606634	396 bp distal
Rr606635	regulatory region 606635	within coordinates
Sdf4	stromal cell derived factor 4	within coordinates
Tssr1404	transcription start site region 1404	724 bp downstream
Tssr40748	transcription start site region 40748	1257 bp downstream
Tssr40749	transcription start site region 40749	483 bp downstream
Tssr40750	transcription start site region 40750	374 bp downstream
Tssr40751	transcription start site region 40751	354 bp downstream
Tssr40752	transcription start site region 40752	215 bp downstream
Tssr44987	transcription start site region 44987	1328 bp upstream
Tssr44988	transcription start site region 44988	996 bp upstream