rs226169689 SNP Detail

Summary

• ID
  rs226169689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114961954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTTGCT TTACACATTC
  ATACATTCAT ACATTTTCGT ATTAAATAGT CAATGCAGTC CGAAGAAAGA GACACCGTAA
  TCTCATTTTT GAAAACTGTA AGTTATTTTA AACAATATTT TCTTAAATGC TTTATTTATT
  ATTATATATA AGCACACTGT AGCCATCTTC AGACACACCA GAAGACGGCG TCAGAAATCA
  Y
  TACAGATGGT TGTGAGCCAC CATGTGGTTG CTGGGATTTG AACTCAGGTC CTTCAAAGAG
  CAGTCAGTGC TCTTACCTGC TGAGCCATCT CTCCAGCCTG AAAAGCTGAG CCATCTCTCC
  AGCCTGAAAA GTGTAAGTTT TATGTATGTA TTTTGCTTCC TTTCAAGACA GGGTTTCTCT
  GTGTAGCCCT GCCTGTTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366343625	MGP_WTSI_5_115273902	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226169689					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366343625	MGP_WTSI_5_115273902	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114961954 () rs orientation: forward

Symbol	Name	Function Class
2610524H06Rik	RIKEN cDNA 2610524H06 gene	425 bp upstream
Cpgi16338	CpG island 16338	228 bp distal
Gm46920	predicted gene, 46920	within coordinates
Gm57857	predicted gene, 57857	425 bp upstream
Gm72061	predicted gene, 72061	within coordinates
Gm72071	predicted gene, 72071	within coordinates
Gm72099	predicted gene, 72099	410 bp downstream
Rr108236	regulatory region 108236	647 bp proximal
Rr124118	regulatory region 124118	within coordinates
Rr378493	regulatory region 378493	689 bp downstream
Tssr52734	transcription start site region 52734	436 bp upstream
Tssr52735	transcription start site region 52735	418 bp upstream
Tssr52736	transcription start site region 52736	404 bp upstream