rs226174263 SNP Detail

Summary

• ID
  rs226174263
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92109896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAAGAGTCA AAGTTTCTTC TCAGTGGGAG
  GCGACTTCTG AAGACTGAAG CCAAGGCCTT CAGCATTATA AACTCAATTC TAAGGCTGAG
  TTATAACCCC AGCTCAAATC TCAGGCTTTC TCAACAAAAT ATTAAAACTG CTTCTTAAAA
  W
  AAAAAATCAG GTAAGTCTTA ACTGTGTGAG AGTCATTTTT AAAAACTCTA GATGACTAGA
  ACGTCTCAAG CAGGAAAAAT GACAGCATAT ATGTATTAGG CACTCCTCCA ATATCCAACT
  TAATGGCAAT CACCCAACTC TCACTTCACA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321611416	CHEV_5_92391063	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226174263					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92109896 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16049	CpG island 16049	393 bp proximal
Rchy1	ring finger and CHY zinc finger domain containing 1	within coordinates
Rr125457	regulatory region 125457	within coordinates
Rr367874	regulatory region 367874	within coordinates
Thap6	THAP domain containing 6	1296 bp upstream
Tssr47269	transcription start site region 47269	388 bp upstream
Tssr47270	transcription start site region 47270	403 bp upstream
Tssr47271	transcription start site region 47271	429 bp upstream
Tssr47272	transcription start site region 47272	838 bp upstream
Tssr47273	transcription start site region 47273	885 bp upstream
Tssr47274	transcription start site region 47274	907 bp upstream
Tssr47275	transcription start site region 47275	1280 bp upstream
Tssr47276	transcription start site region 47276	1310 bp upstream
Tssr51828	transcription start site region 51828	575 bp upstream
Tssr51829	transcription start site region 51829	425 bp upstream
Tssr51830	transcription start site region 51830	245 bp downstream
Tssr51831	transcription start site region 51831	278 bp downstream
Tssr51832	transcription start site region 51832	678 bp downstream
Tssr51833	transcription start site region 51833	802 bp downstream
Tssr51834	transcription start site region 51834	1043 bp downstream
Tssr51835	transcription start site region 51835	1069 bp downstream