rs226184346 SNP Detail

Summary

• ID
  rs226184346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45227736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGATAG GCTTCACTAT
  GAAAAATTCA CATCATATTT ATTATATTCT CCTTTAGTTC ATGCCAGGCA GTGGTAGGCT
  TTCTGTTTCT CAGAAAGATG ACGTGGAATT GCTGGGCGGT AACCAGGGAA CACTCCAGTC
  TAGAATGAAT CCAAAATGTA TTAGGTAAGA CACATTATTT AACCTCCCTG GAGCCTGGGG
  R
  TGGGGCGGGG CGGGGCGGGG GGAAGACATC AGTACTAATC TCAGGGTTAA ATGAAACATA
  GGTGGGAAAC TGAAAAATCA TAATGCTTCA ATATCTGAAA CTTCTGAGTA CTGACAATGT
  TATAATGAAA AATTCCACAC CTGCCATCAT GTGATAGTTA TAGTCATCAA GAGGAACTGT
  ATAATCATGG CATTATCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325166353	CHEV_16_45407486	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226184346					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45227736 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	within coordinates
Cd200	CD200 molecule	within coordinates
Cpgi8295	CpG island 8295	1171 bp proximal
Tssr141234	transcription start site region 141234	1559 bp downstream
Tssr141235	transcription start site region 141235	1582 bp downstream