rs226186043 SNP Detail

Summary

• ID
  rs226186043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51341821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGAGGA GAGGAGAGGA
  GAGGAGAGGA GAGGAGAGGA GAGGAGAGGA GAGGAGAGGA GAGGAAGAGA AGAAGAGAGG
  AGAGGAAGAG AGGAGAGGAA AGGAAGAGGA GAGGAGAGGA AGAGGAGAGG AGGAAGAGGA
  ACTAGACAGA AGTTTGTTCT GCCTTACTTT CCTTCATTTC CGTATGTAGA GCTTTCAACT
  Y
  AATAAGTAAG TTTGCTTTGA TCGGAGTCTA TCTACACTTT TGGGAACTGA AGTTTCCAGA
  CCACCAAGCA CTCCCTAAAG ATCATACTAG CTAATTTTCT TACAAAACCC AAATTCCAGT
  TTTATGTAGA TTTATCTTTC CTTGTTTTAT ACTCCAGTCA GGCAGGCCTG GGCAACTGAC
  CACCCAGTCA TGTTTGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391086631	MGP_WTSI_14_51724039	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226186043					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391086631	MGP_WTSI_14_51724039	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51341821 () rs orientation: forward

Symbol	Name	Function Class
Rnase4	ribonuclease, RNase A family 4	within coordinates
Rr288976	regulatory region 288976	421 bp distal
Rr288977	regulatory region 288977	580 bp proximal
Rr295428	regulatory region 295428	1805 bp proximal
Rr299307	regulatory region 299307	630 bp distal
Tssr125402	transcription start site region 125402	510 bp upstream
Tssr125403	transcription start site region 125403	586 bp upstream
Tssr125404	transcription start site region 125404	799 bp upstream
Tssr125405	transcription start site region 125405	964 bp upstream
Tssr125406	transcription start site region 125406	1048 bp upstream
Tssr128409	transcription start site region 128409	1012 bp downstream
Tssr128410	transcription start site region 128410	1049 bp downstream