rs226197882 SNP Detail

Summary

• ID
  rs226197882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147021788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTATTTCCC TTGTGGGAAC GGGGAGTACT
  GAGAAGGGAG TGTTCACTCT ATGGAGTTAT CTACATGATG GCATTTCAAA GCACTAAAGG
  GGACAGAATT TGAGGTAACC TGACATTTTC ATCAATGTAG TGGTGCTTCT ACTTTCTCTA
  R
  AGATACACAT CCAATTTCTA TTTTATTTTC ACAACGCAGT TTATACACTT TTTTTGGTTA
  GAAAATATGT TGCTTATATG GGTGGTGTTT GTAGAGGTTG TACTCAGATC CAACTCAGAC
  TGCTTAGGGA AGGCCGCACA GGGTGTGTTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320548187	CHEV_2_147005604	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226197882					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147021788 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	1369 bp distal
Cpgi12377	CpG island 12377	774 bp distal
Cpgi12378	CpG island 12378	949 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates
Rr406682	regulatory region 406682	422 bp proximal
Rr566759	regulatory region 566759	285 bp distal
Rr566760	regulatory region 566760	1973 bp distal
Rr566761	regulatory region 566761	1579 bp distal
Rr566762	regulatory region 566762	891 bp distal
Rr566763	regulatory region 566763	825 bp proximal