rs226201043 SNP Detail

Summary

• ID
  rs226201043
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:122556312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAGATA CAATGGAATC
  ACCATGTGAT TTCCTCCCCC TACTTGCTTC CCACTAAAGA CATTTTCCTT GTGGTGAATT
  CTTTGATGAT ACAGATTTTG GAGACACAGC CTAGATTTAT AGCCCAGGCT GCCCTTGAAC
  TCGGGATCCT CTTGACTCAG CCTCTTGAGT GCTGGGATTT CATGTATGTG TCACCATGCC
  W
  GGCTTCAGAA TATTTTGTTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC CCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTGATGTAT GAATTTATTT TATTTATATG
  AGTACACTAT AGTTGTCTTC AGACACACAC CAGAAGAGGG CATTAGATCC CATTACAGAT
  GGTTGTGAGC CACCATGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369908866	MGP_WTSI_6_122529371	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226201043					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369908866	MGP_WTSI_6_122529371	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122556312 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1			Intron
				Noncoding-Transcript-Variant
Tssr1999	transcription start site region 1999			1162 bp upstream
Tssr58682	transcription start site region 58682			1551 bp downstream
Tssr58683	transcription start site region 58683			1455 bp downstream
Tssr58684	transcription start site region 58684			930 bp downstream
Tssr62861	transcription start site region 62861			1409 bp upstream
Tssr62862	transcription start site region 62862			1368 bp upstream
Tssr62863	transcription start site region 62863			1351 bp upstream
Tssr62864	transcription start site region 62864			1332 bp upstream
Tssr62865	transcription start site region 62865			1292 bp upstream
Tssr62866	transcription start site region 62866			1171 bp upstream
Tssr62867	transcription start site region 62867			1079 bp upstream
Tssr62868	transcription start site region 62868			891 bp upstream
Tssr62869	transcription start site region 62869			679 bp upstream
Tssr62870	transcription start site region 62870			1415 bp downstream