rs226202327 SNP Detail

Summary

• ID
  rs226202327
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:37560078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGGAGG AGAGGGGAGG
  AGAGGGGAGG AGAGGGGAAG AGAGGGGAAG AGAGGGGAGA GGGGTGGAGA GGGAGAGAGG
  GGTGGAGGGG GGAGGGGGAG GGGGAGGGGG AGAGAGGGGT GGAGGGGTGG AGGGGGAGAG
  GAGAGAGAGA GGGAGGAGAG GGGGAGGAGA GGGGGAGAGG GAGGGGAGGG GAGAGGGAGG
  W
  TGAGGGGAGA GGGAGGGGAG GGGAGAGGGA GAGGTAGGGG AGATGGAGAG GGAGGAGAGG
  GAGAGGGAGG AGAGAGAGAG AAAGAGAGAG AAAGAGAGAA AGAGAAAGAA AGAGAGAAAG
  AGAGAGGAGG GGAGAGTCTG TGAGAGAGAT TGTGTGTGTG TGTGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	I/LnJ	MA/MyJ	NOD/ShiLtJ	SM/J	ST/bJ	SWR/J
ss374303721	MGP_WTSI_8_38155978	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	I/LnJ	MA/MyJ	NOD/ShiLtJ	SM/J	ST/bJ	SWR/J
rs226202327					SNP	A	A	A	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374303721	MGP_WTSI_8_38155978	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:37560078 () rs orientation: forward

Symbol	Name	Function Class
Ccnq-ps4	cyclin Q, pseudogene 4	1779 bp upstream
Gm18267	predicted gene, 18267	394 bp upstream
Gm63788	predicted gene, 63788	1203 bp downstream