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rs226213305 SNP Detail
Summary
  • ID
    rs226213305
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr10:127030078 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTGTC TCAAAAAAAA AAAAAAAAAA
    R
    AAAAGAAAAG AAAAGAAAAA AAACA                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss323529110 CHEV_10_126631265 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs226213305 SNP G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:127030078 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2345 CpG island 2345 922 bp proximal
Dtx3 deltex 3, E3 ubiquitin ligase within coordinates
F420014N23Rik RIKEN cDNA F420014N23 gene 1040 bp upstream
Gm57007 predicted gene, 57007 within coordinates
Rr224404 regulatory region 224404 122 bp proximal
Tssr96170 transcription start site region 96170 1031 bp upstream
Tssr99735 transcription start site region 99735 1049 bp upstream
Tssr99736 transcription start site region 99736 989 bp downstream
Tssr99737 transcription start site region 99737 1504 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory