rs226219736 SNP Detail

Summary

• ID
  rs226219736
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117548208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGATAAT CAGGAAGCTG
  AGGCAGGAGG ATAGCTTGAG TTGAGCAATT TAAAGCTAAT TTGAGTAACA TTGATAACCT
  ACCTAAAGGA GAAAGGTAAT TTCGTTCTTT GGGGCTTGCC ACTTCTTACT GACAGCCTTC
  ATTTCCCCAA CAGTTCGTGA TTAAGGACTT TTCAGAAACC TTTCTCCCCT TAGGAATGGA
  R
  TGAATATTCA TTTTAAATTT AATAACCTTC AGCCAGGCAT GGTGGCATAG ACCTTTGACC
  CCTGCAGTAG AGACGAAGAG ACAAGTGAGT TCAAGATAGT GTGTCCACGA GTCCACACAG
  TGAGCTGCAG ATCAGCCAGG GCTGCACACA GAGAACCTGT CTCACAGAAC CCAAGCCTTG
  GGAGATGAAG TAGCCCAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323498900	CHEV_10_117149359	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226219736					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117548208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2237	CpG island 2237	1195 bp distal
Gm56970	predicted gene, 56970	770 bp downstream
Gm67727	predicted gene, 67727	within coordinates
Mdm2	transformed mouse 3T3 cell double minute 2	1545 bp upstream
Rr212986	regulatory region 212986	1593 bp proximal
Rr224309	regulatory region 224309	607 bp distal
Rr385357	regulatory region 385357	within coordinates
Tssr95923	transcription start site region 95923	1356 bp downstream
Tssr95924	transcription start site region 95924	547 bp downstream
Tssr99466	transcription start site region 99466	2000 bp upstream
Tssr99467	transcription start site region 99467	1642 bp upstream
Tssr99468	transcription start site region 99468	1567 bp upstream
Tssr99469	transcription start site region 99469	1530 bp upstream