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rs226224650 SNP Detail
Summary
  • ID
    rs226224650
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:11336873 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGAGTTCGA GGCCAGCCTG
    GTTTACAAAG TGAGTTCCAG GACAGCCAGG ACTATACAGA GAAACCCTGT CTCAAAAAAA
    AAAAAGAGAG AGAGAGTAAT AGAAAGATGT CTAGCCAAAG GATGGTACGA TGCAAGGACA
    AAATGTCACA ATAGAGCCCA TTATTACTGT GTACAATTAA TAAATACTAG TGAATGGGGT
    R
    TATTGTAGGA AATAAAGGGG AAAACCTGCT TGTCATAAAG TGATTCAGAG CCCTGACAGC
    GAGCCTCTCA GGTCATGTGA TCAAGGACTC TCAGTAGACA GGTCTTTGTG GAGCTCTTTG
    CCCTCCTGAG CTCAGTCTCT TCATCAATGA AAGGATCGTA TTGATTGTAT TCACTGGGTA
    AACACTCAGG TCACACAAAC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss353092497 MGP_WTSI_2_11253689 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G A A G G G G G G A G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226224650 SNP G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G A A G G G G G G A G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss353092497 MGP_WTSI_2_11253689 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:11336873 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm37851 predicted gene, 37851 763 bp upstream
Gm38171 predicted gene, 38171 within coordinates
Gm75637 predicted gene, 75637 697 bp upstream
Rr396766 regulatory region 396766 284 bp downstream
Rr551766 regulatory region 551766 within coordinates
Rr551767 regulatory region 551767 367 bp distal
Rr551768 regulatory region 551768 566 bp proximal
Rr551769 regulatory region 551769 708 bp proximal
Tssr404 transcription start site region 404 531 bp downstream
Tssr405 transcription start site region 405 726 bp upstream
Tssr406 transcription start site region 406 749 bp upstream
Tssr22607 transcription start site region 22607 489 bp downstream
Tssr22608 transcription start site region 22608 509 bp downstream
Tssr22609 transcription start site region 22609 1313 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory