rs226229986 SNP Detail

Summary

• ID
  rs226229986
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70705284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATAGCCTG GCCTCCATAT
  AGATGCAGAA AGCTGTGGGG TACCTCCTTC CTAGCCCCAC CCACCCCACT CAGGGCTACC
  CCAGACAGCC CCCTTCTCAC TCAGCTGGGC CTGAGGGCTT TGCCTCCTCC GTGCCAGTGC
  CAGGCTCCTC TCTCTATAAA TAACCTCCTG CACTGCTGTC TTGCCCTGGC TGCCCCTGAT
  S
  CCCCCAGAGC CCAATTCCCG CATGGGAGAA CCGTCCATCC CTCCTGTCAC TGTCGTTGAC
  CCACTTGAGA TGCCCTCCCA CTCTCTGGAA AAGTACCCTC TCTCGTTTTC TAGTTTGGAG
  GGCTCGCTCT GGTTTCTTGA GATTTTCCTT TCTTCTATAC ATTCCTCAGC AAATCTCTCT
  CGCTCAGAGA GCACCCAGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391466504	MGP_WTSI_14_70867651	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226229986					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391466504	MGP_WTSI_14_70867651	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70705284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	559 bp distal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	284 bp distal
Tssr4470	transcription start site region 4470	1223 bp downstream
Tssr126423	transcription start site region 126423	1377 bp downstream
Tssr126424	transcription start site region 126424	1303 bp downstream
Tssr126425	transcription start site region 126425	1247 bp downstream
Tssr126426	transcription start site region 126426	1111 bp downstream
Tssr126427	transcription start site region 126427	996 bp downstream
Tssr126428	transcription start site region 126428	984 bp downstream
Tssr126429	transcription start site region 126429	225 bp downstream
Tssr126430	transcription start site region 126430	157 bp downstream
Tssr126431	transcription start site region 126431	within coordinates
Tssr126432	transcription start site region 126432	25 bp upstream