rs226237360 SNP Detail

Summary

• ID
  rs226237360
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70702572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATATGA CTAATAATAA
  TTTAGCACAA AAATATTTCC CAATACTTTA ATTCTGTGAT AGAAAAATGT TTAACTCAGC
  TACTATAATC CCATAATTTT GAAAACTATT TATTAGCTTT TGTGTTTGAC CCTTCCCTAG
  CCAAAGGCAA CTATTTAAGG ACCCTTTAAA ACTCTTGAAA CTACTTTAGA GTCATTAAGT
  W
  ATTTAACCAC TTTTAATTAC TTTAAAATGA TGTCAATTCC CTTTTAACTA TTAATTTATT
  TTAAGGGGGG AAAGGCTGCT CATAATTCTA TTGTTTTTCT TGGTAAAGAA CTCTCAGTTT
  TCGTTTTTAC TACCTCTGTC ACCCAAGAGT TGGCATCTCA ACAGAGGGGA CTTTCCGAGA
  GGCCATCTGG CAGTTGCTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815792	CHEV_6_70675582	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226237360					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70702572 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	858 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	847 bp upstream
Igkj5	immunoglobulin kappa joining 5	1665 bp downstream
Rr158	regulatory region 158	363 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	153 bp downstream
Rr399685	regulatory region 399685	within coordinates
Rr399686	regulatory region 399686	923 bp upstream
Tssr1880	transcription start site region 1880	1262 bp upstream
Tssr56954	transcription start site region 56954	1909 bp downstream
Tssr56955	transcription start site region 56955	1688 bp downstream
Tssr56956	transcription start site region 56956	220 bp upstream
Tssr56957	transcription start site region 56957	842 bp upstream
Tssr56958	transcription start site region 56958	889 bp upstream
Tssr56959	transcription start site region 56959	907 bp upstream
Tssr56960	transcription start site region 56960	930 bp upstream
Tssr56961	transcription start site region 56961	944 bp upstream
Tssr56962	transcription start site region 56962	952 bp upstream
Tssr56963	transcription start site region 56963	1001 bp upstream
Tssr56964	transcription start site region 56964	1016 bp upstream
Tssr56965	transcription start site region 56965	1022 bp upstream
Tssr56966	transcription start site region 56966	1033 bp upstream
Tssr56967	transcription start site region 56967	1048 bp upstream
Tssr56968	transcription start site region 56968	1072 bp upstream
Tssr56969	transcription start site region 56969	1108 bp upstream
Tssr56970	transcription start site region 56970	1121 bp upstream
Tssr56971	transcription start site region 56971	1141 bp upstream
Tssr56972	transcription start site region 56972	1167 bp upstream
Tssr56973	transcription start site region 56973	1205 bp upstream
Tssr56974	transcription start site region 56974	1237 bp upstream
Tssr56975	transcription start site region 56975	1270 bp upstream
Tssr61321	transcription start site region 61321	894 bp downstream
Tssr61322	transcription start site region 61322	1059 bp downstream
Tssr61323	transcription start site region 61323	1074 bp downstream
Tssr61324	transcription start site region 61324	1164 bp downstream
Tssr61325	transcription start site region 61325	1230 bp downstream
Tssr61326	transcription start site region 61326	1265 bp downstream
Tssr61327	transcription start site region 61327	1279 bp downstream
Tssr61328	transcription start site region 61328	1370 bp downstream