rs226240439 SNP Detail

Summary

• ID
  rs226240439
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:12307072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGGGCAAG TGCCTGTTGA
  GCCCGCTAGA TTTCGAGTCT CTAGTTTAAG GACCATCTAA ATTTTATGGA TGTCACCTCA
  AGTCATTGTT TTGGAGAAGC GGTGTTCCAT ATGCGGCGAG AATTTAATGA TTTCCCAATA
  TTGCGCAGCT CGGATACAAG CATACAAAAG AGTATACCAA CTCCAGAAAA GAGTGGTTAT
  M
  TGGCTGTCAC CTCTACCTTT GAGGGTAAAT CAGTTTCTTC CTCAGTAAAT GGGATTTGAT
  AATGGAATGT AAGAACCCTC TTCCTCTCCT ATTCCGCTGA CATACTAATA CAAAAATCCT
  GTAGGTTTTC TCAGTCTTTC TCAAGGGCAT CTCTGGCACA TTGTATGATT TGGTATAAAC
  CTCTATCCTA TGAGGTTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353116150	MGP_WTSI_2_12223888	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	C	C	C	A	A	A	A	A	C	C	C	A	A	A	C	A	C	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226240439					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	C	C	C	A	A	A	A	A	C	C	C	A	A	A	C	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353116150	MGP_WTSI_2_12223888	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12307072 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11209	CpG island 11209	52 bp distal
E030013I19Rik	RIKEN cDNA E030013I19 gene	within coordinates
Itga8	integrin alpha 8	339 bp upstream
Tssr16173	transcription start site region 16173	1574 bp downstream
Tssr16174	transcription start site region 16174	1427 bp downstream
Tssr16175	transcription start site region 16175	1229 bp downstream
Tssr16176	transcription start site region 16176	1044 bp downstream
Tssr16177	transcription start site region 16177	1011 bp downstream
Tssr16178	transcription start site region 16178	995 bp downstream
Tssr16179	transcription start site region 16179	948 bp downstream
Tssr22663	transcription start site region 22663	1166 bp upstream
Tssr22664	transcription start site region 22664	358 bp upstream
Tssr22665	transcription start site region 22665	339 bp upstream
Tssr22666	transcription start site region 22666	274 bp upstream
Tssr22667	transcription start site region 22667	270 bp upstream
Tssr22668	transcription start site region 22668	256 bp upstream