rs226242256 SNP Detail

Summary

• ID
  rs226242256
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110975527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATATCTGA GACAGGAGAA
  GAAAGAGGAA TTAACCAACT CAAGCTAGTA GTTTGCAGAT AGGGGCTAGT TTTGTTCTCT
  GGGATGTTTG GCAATGTCTG TGGACATGTG TGCCTGCCAC AGTGAAGGGC GGCAATGGGG
  AAGGTGCCCG GGCAATGTGG GCAGAGGCTG AGGATGTTGC TAAACTTGCA GTGCACAGCA
  M
  AAGCATGCTT AGCAGGGATG CGGCTGAGAG CCCTGATGAT AGACTCTCAT GCATTATGTT
  TTGGAGCATT AGTCTGTACT AAGAACAGTG GGGAAATAGT GAAGGTTTTG TGTAGGAGTG
  GAATGATCAG AAGGATGGCT TATTATGGGC TGGAGATGGT ATCAGAGAAG AGGCATCAGT
  GGTTTCACGG AGGTGAGTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323195921	CHEV_9_111048963	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226242256					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110975527 () rs orientation: forward

Symbol	Name	Function Class
Lrrfip2	leucine rich repeat (in FLII) interacting protein 2	within coordinates
Rr687307	regulatory region 687307	1420 bp distal
Tssr87483	transcription start site region 87483	236 bp upstream
Tssr87484	transcription start site region 87484	1574 bp upstream