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rs226249466 SNP Detail
Summary
  • ID
    rs226249466
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:142206937 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AATGCCTGTG GGTGTGAGTA
TAATCATGTG CTTTTTAGGG TAGGTAGGGA AAAGTGAGAT TTTGGGACTG GGGGCTTGTG
CCAATTAAGT TCTATTTCCA GTTTTCATGT TCTGTTCTTC TCCTTGGGTT CTTTCACCCA
GCCCCCTTGG TGACATGGGG GACATTTGTG ATGGAATGAC CAGTGAAGAA AGAGTTTGGG
Y
GGCTATTGTT GTTCTCAGCC AGCTTTACAC TAAAGGTGCT TGGGATAAGG AGAGGGCACT
GAAGCAATGA CATGCCACCT GCAAAATTTT GGGTCCCCTT CCTTTCTTCT TGGGTTCTGG
GATCCAAGTC TTAGCCAATT TGACTAAAGA TCCAAATGGA AAGAAGATGA AGGGGGGGGG
GCGCCGAATT ATTTGATTTT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373454557 MGP_WTSI_7_149839105 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226249466 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss373454557 MGP_WTSI_7_149839105 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:142206937 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi19966 CpG island 19966 1085 bp proximal
D7Mit46 DNA segment, Chr 7, Massachusetts Institute of Technology 46 105 bp distal
Gm49394 predicted gene, 49394 within coordinates
Igf2 insulin-like growth factor 2 within coordinates
Mir483 microRNA 483 1724 bp downstream
Rr167001 regulatory region 167001 463 bp proximal
Tssr2462 transcription start site region 2462 143 bp downstream
Tssr2463 transcription start site region 2463 644 bp downstream
Tssr70229 transcription start site region 70229 183 bp downstream
Tssr70230 transcription start site region 70230 90 bp downstream
Tssr70231 transcription start site region 70231 353 bp upstream
Tssr70232 transcription start site region 70232 389 bp upstream
Tssr70233 transcription start site region 70233 439 bp upstream
Tssr70234 transcription start site region 70234 465 bp upstream
Tssr70235 transcription start site region 70235 501 bp upstream
Tssr70236 transcription start site region 70236 533 bp upstream
Tssr70237 transcription start site region 70237 629 bp upstream
Tssr70238 transcription start site region 70238 648 bp upstream
Tssr70239 transcription start site region 70239 792 bp upstream
Tssr70240 transcription start site region 70240 1113 bp upstream
Tssr75849 transcription start site region 75849 1855 bp upstream
Tssr75850 transcription start site region 75850 1809 bp upstream
Tssr75851 transcription start site region 75851 1796 bp upstream
Tssr75852 transcription start site region 75852 1606 bp upstream
Tssr75853 transcription start site region 75853 1565 bp upstream
Tssr75854 transcription start site region 75854 1158 bp upstream
Tssr75855 transcription start site region 75855 974 bp upstream
Tssr75856 transcription start site region 75856 935 bp upstream
Tssr75857 transcription start site region 75857 920 bp upstream
Tssr75858 transcription start site region 75858 882 bp upstream
Tssr75859 transcription start site region 75859 826 bp upstream
Tssr75860 transcription start site region 75860 771 bp upstream
Tssr75861 transcription start site region 75861 739 bp upstream
Tssr75862 transcription start site region 75862 192 bp upstream
Tssr75863 transcription start site region 75863 161 bp upstream
Tssr75864 transcription start site region 75864 132 bp upstream
Tssr75865 transcription start site region 75865 99 bp upstream
Tssr75866 transcription start site region 75866 52 bp upstream
Tssr75867 transcription start site region 75867 19 bp upstream
Tssr75868 transcription start site region 75868 within coordinates
Tssr75869 transcription start site region 75869 3 bp downstream
Tssr75870 transcription start site region 75870 24 bp downstream
Tssr75871 transcription start site region 75871 65 bp downstream
Tssr75872 transcription start site region 75872 466 bp downstream
Tssr75873 transcription start site region 75873 488 bp downstream
Tssr75874 transcription start site region 75874 697 bp downstream
Tssr75875 transcription start site region 75875 734 bp downstream
Tssr75876 transcription start site region 75876 766 bp downstream
Tssr75877 transcription start site region 75877 842 bp downstream
Tssr75878 transcription start site region 75878 1118 bp downstream
Tssr75879 transcription start site region 75879 1140 bp downstream
Tssr75880 transcription start site region 75880 1190 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory