rs226250592 SNP Detail

Summary

• ID
  rs226250592
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22714445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGCAGC GCTGTCCCAA
  ACTGAGCCAG TTCAACATAG GTCAGCCACA GGCAGAAGGC AGGTAACACC CTGGCCTCCT
  GGCTTTACCT AACACTTAAT AGCAGGGCTC TCTGTTCAGA CACAATACAT TCACCGGGTG
  CCACACGTTT ACACCCTGCC AGTAACATCT GCCGCAGTCT GGGAATCAAC ACTAACAAAG
  R
  TATGGGCAAA TACTGGAAGG TTCCTAATCT GCCTTTCAAA TCCAGGTTTT GAGGTTGGGA
  GGGGACCATC TAATTGTATA GCCAAAGCAA CTATTTGAGT GCAATAGACT TGAGATGTTT
  AAGGAAGCTG GCAATGGAAA TAAGTCAAGA CATACTTGCA AATACATTAG TGTAGGTGGT
  GATTCTGTAA TTCCTGGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325113558	CHEV_16_22895768	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226250592					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22714445 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1309 bp upstream
Tssr4819	transcription start site region 4819	354 bp downstream
Tssr4820	transcription start site region 4820	252 bp upstream
Tssr137563	transcription start site region 137563	1454 bp downstream
Tssr137564	transcription start site region 137564	1424 bp downstream
Tssr137565	transcription start site region 137565	1287 bp downstream
Tssr137566	transcription start site region 137566	1278 bp downstream
Tssr137567	transcription start site region 137567	910 bp downstream
Tssr137568	transcription start site region 137568	879 bp downstream
Tssr137569	transcription start site region 137569	858 bp downstream
Tssr137570	transcription start site region 137570	841 bp downstream
Tssr137571	transcription start site region 137571	503 bp downstream
Tssr137572	transcription start site region 137572	404 bp downstream
Tssr137573	transcription start site region 137573	394 bp downstream
Tssr137574	transcription start site region 137574	375 bp downstream
Tssr137575	transcription start site region 137575	365 bp downstream
Tssr137576	transcription start site region 137576	305 bp upstream
Tssr137577	transcription start site region 137577	727 bp upstream
Tssr137578	transcription start site region 137578	798 bp upstream
Tssr140504	transcription start site region 140504	1303 bp upstream
Tssr140505	transcription start site region 140505	1254 bp upstream
Tssr140506	transcription start site region 140506	834 bp upstream
Tssr140507	transcription start site region 140507	471 bp upstream
Tssr140508	transcription start site region 140508	429 bp upstream
Tssr140509	transcription start site region 140509	411 bp upstream
Tssr140510	transcription start site region 140510	363 bp upstream
Tssr140511	transcription start site region 140511	349 bp upstream
Tssr140512	transcription start site region 140512	862 bp downstream
Tssr140513	transcription start site region 140513	873 bp downstream
Tssr140514	transcription start site region 140514	906 bp downstream