rs226252901 SNP Detail

Summary

• ID
  rs226252901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82424829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGCCTCGC CGCAGCGGCC
  CGCCCTCCCC CGGCGCCCGG TGCACGTGGC CGCGCTCGGA GCGGGAAGGC CGCGCCACCG
  CTCGCCCCTC CTCTCCTCCT CCTCCTGCCG CGCTGGCCGC GTCCCAATCC CCACCCCCAG
  AGCCCGGGGC GCCGGCGGAA AGCGGCTCCC TTCCCGCGGG GGTGCGGGCA GGGCGGGGCC
  R
  CGGCGCGCCC GAGGCTGCGG GGCGGGAGCG CGCGGGGTGC GTGTGCGGCT GCGGGTCTCC
  CCGGCGGCTC CCGCCGGCTC CCCGCCCCGC CCCCCGCCGA GTGAATGAAC TTGATTCCCG
  GGACCCTGGA GGCGACCGGC CAGCACCCCC TTTCGCGCGG GCACTCTCTC CCACACACAC
  CGCCCCCCAA ATTCCGGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss362190676	MGP_WTSI_4_82152496	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs226252901					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362190676	MGP_WTSI_4_82152496	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82424829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14398	CpG island 14398	within coordinates
Gm11266	predicted gene 11266	1397 bp upstream
Gm57123	predicted gene, 57123	721 bp upstream
Nfib	nuclear factor I/B	within coordinates
Rr376744	regulatory region 376744	1121 bp upstream
Tssr37680	transcription start site region 37680	638 bp downstream
Tssr37681	transcription start site region 37681	1354 bp upstream
Tssr37682	transcription start site region 37682	1414 bp upstream
Tssr42247	transcription start site region 42247	1694 bp upstream
Tssr42248	transcription start site region 42248	1363 bp upstream
Tssr42249	transcription start site region 42249	1337 bp upstream
Tssr42250	transcription start site region 42250	1234 bp upstream
Tssr42251	transcription start site region 42251	1206 bp upstream
Tssr42252	transcription start site region 42252	991 bp upstream
Tssr42253	transcription start site region 42253	902 bp upstream
Tssr42254	transcription start site region 42254	853 bp upstream
Tssr42255	transcription start site region 42255	790 bp upstream
Tssr42256	transcription start site region 42256	786 bp upstream
Tssr42257	transcription start site region 42257	754 bp upstream
Tssr42258	transcription start site region 42258	725 bp upstream
Tssr42259	transcription start site region 42259	118 bp upstream