rs226255058 SNP Detail

Summary

• ID
  rs226255058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135042892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGACCCA CCTACCTCTG
  CCTTCTGAAT GCTGGGAATA AAGGCGTGCG CCTCCACCGC CTGGTTCATT ACCAATAGCT
  TGAATCCCAT CTTACCTTTA TGCTGTTACT AGTATACCCC AAACACGCAG TGCCTGGGAA
  GCAGTCTAAC TGAACTCAGC ATTTCCAAGC TGAGGGACTT TTGTTTGTTT TGAGATAGGG
  Y
  TTCTCTGTGA GACACCACTG CTTGACTCTA AAATGACCAC CAATCCATAT TGGAAATAGA
  AAAATACTTT TGAGATTTTG AGCATCTCTT TTGTTGTTGT TTATTTGTTT TTGGTTTTCT
  CTGTATAGCC CTGGCTGTCC TGGACCTCAC TCTGTAGACC AGGCTGGCCT CGAACTCAGA
  AATCTGCCTC CCAAGGGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366824643	MGP_WTSI_5_135489908	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226255058					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366824643	MGP_WTSI_5_135489908	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135042892 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	1863 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	1250 bp upstream
Gm73578	predicted gene, 73578	636 bp upstream
Rr110217	regulatory region 110217	1092 bp distal
Rr110218	regulatory region 110218	92 bp distal
Rr110219	regulatory region 110219	909 bp proximal
Rr124504	regulatory region 124504	691 bp distal
Tssr1662	transcription start site region 1662	1301 bp upstream
Tssr1663	transcription start site region 1663	868 bp upstream
Tssr1664	transcription start site region 1664	834 bp upstream
Tssr53717	transcription start site region 53717	1277 bp upstream
Tssr53718	transcription start site region 53718	1230 bp upstream
Tssr53719	transcription start site region 53719	1215 bp upstream
Tssr53720	transcription start site region 53720	1170 bp upstream
Tssr53721	transcription start site region 53721	913 bp upstream
Tssr53722	transcription start site region 53722	880 bp upstream