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rs226256682 SNP Detail
Summary
  • ID
    rs226256682
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr12:4761488 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      aatatactc tgtataaaga tctagcacat
    gcctagcaca aagtagctag caaatgttaT TTGCAAGAAG TACTGGACAA ACTGCATGCA
    TTTTAAATTA ATATAACTAT TCATAGGCAT TTTCACCTAG ATAAAGCAGT CCATTCAACT
    M
    AGTGGCTCCT CCTTGGCAGA AGAGGCAGAC AGGGTGCAGA CTGTCAGGCA TAGCAGGTTG
    TGGGGTTTCT CGGTCAAGGC TAGTGGCACT CAGCGGGAAG GAGGCTGAGG TGACTGAGAC
    TAGCCTGGAT CTTGAAGGAT GAGTTGGGTA                                 
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss323874777 CHEV_12_4718294 CHEVERUD SCREENING_POP f SNP C A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs226256682 SNP C A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:4761488 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm53750 predicted gene, 53750 within coordinates
Itsn2 intersectin 2 within coordinates
Rr260648 regulatory region 260648 1688 bp distal
Rr260649 regulatory region 260649 1313 bp proximal
Tssr112576 transcription start site region 112576 848 bp upstream
Tssr112577 transcription start site region 112577 867 bp upstream
Tssr115645 transcription start site region 115645 727 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory