rs226264905 SNP Detail

Summary

• ID
  rs226264905
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135159267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTACTGC AGCTCAATGG
  CGAGAGGGTT TTTCTGTTTC TCTGTTTTCA TATTGAGGAT TGAACCTGGC ATCTCCAGCA
  TGCCGGTCAA GGGCTTTACC ATTGAACTAC ATCACTCTAG GCCAGGCTGA GCTTTGTGTA
  GGTTTTTGGA GCTGGGTGGC AGGTCTGGAG CTCTAAGTTA TAGTATCTTC ATGCCTGCCC
  M
  CCCCCCCTTT GGACCCACAC TTCCTGTAAC ATCATGCAGC ATTGCTTCTC GTGGGTTAGT
  GAGCACTCCA AGGTTTTAAA ACCTTAAAAT ATAGCATGAT TGAATAGTTA AAAAAAAAAA
  AATCAAATCT GTGTTCCCCC AAAACACTAA AAGCTCCTCT CTTGGAAACT GGCTGCCAAT
  GAAGCAAATT GGAAAGCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/2J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi5/Ianm	RIIIS/J	SWR/J	WSB/EiJ
ss363366039	MGP_WTSI_4_134987871	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/2J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi5/Ianm	RIIIS/J	SWR/J	WSB/EiJ
rs226264905					SNP	C	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363366039	MGP_WTSI_4_134987871	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135159267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15072	CpG island 15072	1215 bp proximal
Gm15979	predicted gene 15979	1115 bp upstream
Gm69862	predicted gene, 69862	1973 bp upstream
Rcan3	regulator of calcineurin 3	within coordinates
Tssr43991	transcription start site region 43991	1788 bp downstream