rs226266575 SNP Detail

Summary

• ID
  rs226266575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17464437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCACCGA GGTGGGTGCG
  AGCCCGGGGG CTTAGGAAAC TGAAGGTATG GGGTCGGGGA GGTGCAAACT AGAATTGAGC
  TTGTCGCTTT AGAAGGAGTG TTGTTGACGG CCACCTGTGT GACTCAGGGG CGCCAAGAGC
  ATTAGGTGCT CCAGGGCTGC TGTAGCTCTG CAAGTTTCAC CTCTGGGATC TGACTCAGCC
  Y
  TTACAGAAGG GATCGGTCAC CCTGTCCAGG GTGATACAGC CGGCAAGGTT TGAGCCCAGC
  TATTTCCTTG TTCCTAGTCT TGCTTTATCT GCCTTGAGGG AGCGCGCGAG GAGGGGGTGG
  GGGTGTCTTT CTCAAGGGCA GGTGTTTCTG GGATGGTCTG AATTTTTTAT TCCTGGCAAA
  CACACGGAGG GTGTGATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367526416	MGP_WTSI_6_17414438	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226266575					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367526416	MGP_WTSI_6_17414438	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17464437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	within coordinates
Met	met proto-oncogene	Intron
Rr626799	regulatory region 626799	390 bp distal
Rr626800	regulatory region 626800	943 bp distal
Rr626801	regulatory region 626801	900 bp distal
Rr626802	regulatory region 626802	within coordinates
Tssr55050	transcription start site region 55050	996 bp downstream
Tssr55051	transcription start site region 55051	857 bp downstream
Tssr55052	transcription start site region 55052	629 bp downstream
Tssr55053	transcription start site region 55053	609 bp downstream
Tssr55054	transcription start site region 55054	540 bp downstream
Tssr55055	transcription start site region 55055	532 bp downstream
Tssr55056	transcription start site region 55056	367 bp downstream
Tssr55057	transcription start site region 55057	325 bp downstream
Tssr55058	transcription start site region 55058	289 bp downstream
Tssr55059	transcription start site region 55059	264 bp downstream