rs226267552 SNP Detail

Summary

• ID
  rs226267552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:45543526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTGCACC TTCCTCACGG
  AGCCCGGAGT CGACTTGGAG CAATTGCGGT GAGGCGACAG CTCCGGCGCA CACCCGAGAA
  GAAGCGGCGG TGGCGGCGGC CCCAGCCATG CTGTGCTATG TGACGAGGCC GGACGCGGTG
  CTGATGGAGG TAGAGGTGGA GGCAAAAGCC AACGGCGAGG ACTGTCTCAA CCAGGTGAGG
  R
  CGGCGATCGG AAAGGGGATC CCTTCTTGTC CCCGGGAAGC CTCGGGGCTC GGGGATGCTC
  CCCGGGAGCC GGGCGACGTT GCAGCAGCGG CCCGTGGAGT GCTCCCGGGA CGCCAGGCTC
  CAGCCTCCTC CTCCTCCCCG CGAGTGGAGA GTGCGGTGGG GGGGGGGCGG GGGGAGCATA
  GAGGACGCTT ACGGTGGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388479180	MGP_WTSI_13_45485419	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226267552					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388479180	MGP_WTSI_13_45485419	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45543526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5531	CpG island 5531	within coordinates
Gm56579	predicted gene, 56579	1761 bp upstream
Mylip	myosin regulatory light chain interacting protein	within coordinates
Rr403746	regulatory region 403746	311 bp downstream
Rr478672	regulatory region 478672	1358 bp distal
Rr478673	regulatory region 478673	298 bp distal
Rr478674	regulatory region 478674	517 bp distal
Rr478675	regulatory region 478675	387 bp proximal
Rr478676	regulatory region 478676	1271 bp proximal
Rr478677	regulatory region 478677	1772 bp proximal
Tssr119571	transcription start site region 119571	300 bp downstream
Tssr119572	transcription start site region 119572	1714 bp upstream
Tssr119573	transcription start site region 119573	1730 bp upstream