rs226269363 SNP Detail

Summary

• ID
  rs226269363
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126049043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCAGACA CTGCACCGGG
  TGACAGTGAT TCCCACAGAG CACGGTTAAT GCAGACTGTG GCTGCAGGTG CGGCTGGGAC
  GGAGCACACC TGCCTGCCCT GGGTTCCAGC CCCAGCACCA CACTGGGCAG CACTGGACTA
  AACGACCCTG TCTTCTTTTC TTGGCTTTTG TTTTCGTTTC TGAAACGGAG CCTTGCTTTC
  S
  AGGCTGGCCT ATCTCAGTCT ACTGAGGGCC GAGCTACTGA GTCTGACTGG GCTAGGTGTT
  TCATGAAACC GTCACACCTT CATGCCTTGT GATTTGGGGA TCCACAGGAC ACAGCCGTTC
  ATCTGACACA CTGTACTAGG GAATGAGAAT CATGGCAGCA GGCAAGAGGG AGCCACTGGG
  GAAAACTGTC TCAACACAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373068802	MGP_WTSI_7_133593385	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226269363					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373068802	MGP_WTSI_7_133593385	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126049043 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	Intron
Tssr69023	transcription start site region 69023	1957 bp downstream
Tssr74676	transcription start site region 74676	1969 bp upstream
Tssr74677	transcription start site region 74677	1926 bp upstream
Tssr74678	transcription start site region 74678	1905 bp upstream
Tssr74679	transcription start site region 74679	1885 bp upstream
Tssr74680	transcription start site region 74680	1867 bp upstream
Tssr74681	transcription start site region 74681	1841 bp upstream
Tssr74682	transcription start site region 74682	1830 bp upstream
Tssr74683	transcription start site region 74683	1627 bp upstream
Tssr74684	transcription start site region 74684	1525 bp upstream
Tssr74685	transcription start site region 74685	1489 bp upstream
Tssr74686	transcription start site region 74686	1233 bp upstream
Tssr74687	transcription start site region 74687	1197 bp upstream
Tssr74688	transcription start site region 74688	1112 bp upstream
Tssr74689	transcription start site region 74689	1041 bp upstream
Tssr74690	transcription start site region 74690	625 bp upstream
Tssr74691	transcription start site region 74691	565 bp upstream
Tssr74692	transcription start site region 74692	281 bp downstream
Tssr74693	transcription start site region 74693	307 bp downstream
Tssr74694	transcription start site region 74694	430 bp downstream
Tssr74695	transcription start site region 74695	631 bp downstream