rs226273465 SNP Detail

Summary

• ID
  rs226273465
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58542655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATAACT TTGAACTTCT
  GATTATGCCC CCACCTCCCA TGTGCTAGAT AGGTTACAGG CCTGTATCAC TATCATTAGC
  ATATGCAGTG CTGGGGTGGA GCTGTGGGCT TCCAGTGTGC TAAACCAAGC ACTTCATCAA
  CTGTATTACA CCCCTAGTCC CTTAGTTTAC TATTGTGAAG GTCTTACTTT ATAATACAAG
  S
  CAGCTTTGAA CTCATGACTT AGCAGCCTCA GTTTTAAGAG TAGTGGGATC ATAGCTATGC
  CCCATTCCCA GATCTAGTAT TTTAATCACT AGGTGAGCAG CCCTATATAG TCAAGGATAG
  CCACGAATCC TTGTTGTAAA CGTGCTTAAA CATTATGAGT GGTTTTTGCA AAATTTTCTG
  TAACTGTATT GTGATATTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349768681	MGP_WTSI_1_58560340	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226273465					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349768681	MGP_WTSI_1_58560340	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58542655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi280	CpG island 280	938 bp proximal
Gm15834	predicted gene 15834	1650 bp upstream
Orc2	origin recognition complex, subunit 2	within coordinates
Rr396056	regulatory region 396056	1452 bp upstream
Rr411446	regulatory region 411446	within coordinates
Rr411447	regulatory region 411447	385 bp proximal
Rr411448	regulatory region 411448	1466 bp proximal
Rr411449	regulatory region 411449	1603 bp proximal
Rr411450	regulatory region 411450	1672 bp proximal
Tssr6780	transcription start site region 6780	1639 bp upstream
Tssr11783	transcription start site region 11783	1423 bp downstream
Tssr11784	transcription start site region 11784	1450 bp downstream