rs226278354 SNP Detail

Summary

• ID
  rs226278354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36597412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGTGCCA CCGCCCCTCG
  GTCTCAGCAC GGCTCTCGGC GCCCCTGAGC TCGGATTCGG CGCTCCACCG CGCCGGGCGC
  CGGTTCTTTC TCCGCTGCAG CCGCCGCCAC CGCCGCTCTC CGCCCCCAAC CCCTTGACGT
  CAGGCAGAGG GTGTCGAGTG GTGGCCGGGG GCGGGACGCG AAGGCCCGCC CAGGAGGGGG
  Y
  TGCGACCCGC TGCCTTGCTT ACCCGGCACT GAGGCTTGGG GACCCTTTAC GACTCTTGCA
  GCTCGTGAGT CAAGGTCTGC GCCACAGCGG CCGGAGGCGG GGAGGGGGCG GGGTGGGGGG
  CGGGGAGGGA CTCCAGGCGT TGCCACCGGG AACTGCACGA ACTGCACTCA CCTGGTGAAG
  TGTGCCTTCA AGTCCTGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349253245	MGP_WTSI_1_36615176	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226278354					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349253245	MGP_WTSI_1_36615176	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36597412 () rs orientation: forward

Symbol	Name	Function Class
Cpgi148	CpG island 148	within coordinates
D430040D24Rik	RIKEN cDNA D430040D24 gene	within coordinates
Rr409350	regulatory region 409350	1062 bp distal
Rr409351	regulatory region 409351	within coordinates
Rr409352	regulatory region 409352	8 bp proximal
Rr409353	regulatory region 409353	39 bp proximal
Sema4c	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	within coordinates
Tssr40	transcription start site region 40	600 bp downstream
Tssr11262	transcription start site region 11262	1640 bp upstream
Tssr11263	transcription start site region 11263	770 bp upstream
Tssr11264	transcription start site region 11264	119 bp upstream
Tssr11265	transcription start site region 11265	65 bp upstream
Tssr11266	transcription start site region 11266	19 bp downstream