rs226279332 SNP Detail

Summary

• ID
  rs226279332
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20369254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACACACA GAAAATGCTT
  TAAATAAAAG CTACTTCCTG ACCATGACTT CCTGGGCAAT GTGTTCTTCC GGAGACTGTT
  GAACGCCAAA GTTTACAAGC AGTCTGAGCG CGAACCCTGC CCATTCAGGT CGGAGCACCA
  TTGGGAGCAG GGTTCCATCC TGTGGTCAGG GGGTTGCTGT GCTCCTGAAA AAAAAAAAAA
  R
  AAAGAAAGAA AGAAAAGAAA AGGAGAAAAA AGATGCAGGA AGCCGAACTC CCAGGGCAGA
  GTCTGCTGGA GGCTTTGCCT CCAGTGCTTA AGTGTAGCCT CCATCTTTCT TTGGGGACCC
  AGGGCGCGGT TGGCTGTGCC GCTGTGGCTT CATTCTCTGG GGCGCCAAGG GGAGCATTTC
  TCATACACCA GTGAAAACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387917447	MGP_WTSI_13_20276953	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	A	G	A	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226279332					SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	A	G	A	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387917447	MGP_WTSI_13_20276953	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20369254 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	166 bp proximal
Elmo1	engulfment and cell motility 1	within coordinates
Rr403595	regulatory region 403595	within coordinates
Tssr118580	transcription start site region 118580	95 bp downstream
Tssr118581	transcription start site region 118581	73 bp downstream
Tssr118582	transcription start site region 118582	203 bp upstream
Tssr118583	transcription start site region 118583	238 bp upstream
Tssr118584	transcription start site region 118584	319 bp upstream
Tssr118585	transcription start site region 118585	332 bp upstream